Interdisciplinary Research in Biomedicine

Complete Paper List in Reverse Chronological Order

Selected recent papers in biomedicine

1. Q. Wang,* T. M. Tang*,  N. Youlton, C. S. Weldy, A. M. Kenney, O. Ronen, J. W. Hughes, E. T. Chin, S. C. Sutton. A. Agarwal, X. Li, M. Behr, K. Kumbier, C. S. Moravec, W. H. W. Tang, K. B. Margulies, T. P. Cappola, A. J. Buitte, R. Arnaout, J. B. Brown, J. R. Priest, V. N. Parikh, B. Yu*, E. Ashley* (2023). Epistasis regulates genetic control of cardiac hypertrophy.  https://www.medrxiv.org/content/10.1101/2023.11.06.23297858v1 (Code) (PCS documentation)

2. R. Cahill, Y. Wang, R. P. Xian, A. J. Lee, H. Zeng, B. Yu, B. Tasic, R. Abbasi-Asl (2023). Unsupervised pattern discovery in spatial gene expression atlas reveals mouse brain regions beyond established ontology.  https://www.biorxiv.org/content/10.1101/2023.03.10.531984v2  (Code)

3. E. Irajizad, A. Kenney, T. Tang, J. Vykoukal, R. Wu, E. Murage, J. B. Dennison, M. Sans, J. P. Long, M. Loftus, J. A. Chabot, M. D. Kluger, F. Kastrinos, L. Brais,  A. Babic, K. Jajoo, L. S. Lee, T. E. Clancy, K. Ng, A. Bullock, J. M. Genkinger, A. Maitra, K. A. Do, B. Yu, B. W. Wolpin, S. Hanash, J. F. Fahrmann. (2023). A blood-based metabolomic signature predictive of risk for pancreatic cancer.  Cell Reports Medicine 4(9): 101194.  doi: 10.1016/j.xcrm.2023.101194. (PCS related) (Editorial in Cell Reports Medicine by L. Oldfield and E. Costello on Erajizad et al. (2023))

4. A. R. Hsu, Y. Cherapanamjeri, B. Park, T. Naumann, A. Odisho, and B. Yu (2023). Diagnosing transformers: illuminating feature space for clinical decison-making. https://arxiv.org/abs/2305.17588

5. N. Altieri, B. Park, J. DeNero, A. Odisho, B. Yu. (2021). Improving natural language information extraction from cancer pathology reports using transfer learning and zero-shot string similarity.  JAMIA Open.  2021 Sept. 30 4(3).

6. B.  Norgeot*,  G. Quer,  B. K. Beaulieu-Jones, A. Torkamani,  R.  Dias,  M. Gianfrancesco,  R. Arnaout,  I. S. Kohane,  S. Saria,  E. Topol,  Z. Obermeyer,  B. Yu & A. Butte* (2020). Minimum information about clinical artificial intelligence modeling: the MI-CLAIM checklist, Nature Medicine, 26, 1320–1324.