Software

Software

Also see GitHub

• VeridicalFlow: Library for building stable, trustworthy data-science pipelines, PCS framework, paper, docs

• simChef: R package to facilitate PCS simulation studies, data science workflows

• imodels: Python package for interpretable machine learning models, FIGS, hierarchical shrinkage, MDI+, FIGS paper, hierarchical shrinkage paper, MDI+ paper

• iRF: Iterative Random Forests, stable high-order interactions, PCS-guided, paper

• Adaptive wavelets: Adaptive interpretable wavelets and wavelet distillation, domain-agnostic, paper

• COVID-19 severity prediction: Extensive COVID-19 data and forecasting for counties and hospitals, pandemic severity index, paper, website

• Epistasis cardiac hypertrophy: Code for epistasis in genetic control of cardiac hypertrophy, PCS-guided, preprint, PCS docs

• Molecular partner prediction: Predicting successful CME events using clathrin markers, cell biology

• sMPS2: Simplified MyProstateScore2.0 for high-grade prostate cancer detection, clinical decision rules

• MS-analysis-NMF: Non-negative matrix factorization for deconvolving complex mass spectra, simulation study

• VDS book supplementary: Supplementary materials for Veridical Data Science book, educational resources

• imodels-experiments: Experimental interpretable models to accompany imodels package, rule-based models

• Yu Group website: Source code for the Yu Group website, web development